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/ Celestin Apprentice 5 / Apprentice-Release5.iso / Source Code / Libraries / DCLAP 6d / dclap6d / SeqPups / SeqPup.prefs < prev   
Text File  |  1996-07-05  |  3KB  |  176 lines
  1. ; SeqPup.prefs 
  2. ; default preferences for application
  3.  
  4. [version=5]
  5. ; increase version # each time this is edited to get app to update
  6. ; prefs.  You can add a new [version=6] section at the end and
  7. ; any new values after that will replace version=5 values.
  8.  
  9. [general]
  10. gOptionIsOn=1
  11. gShortFolder=0
  12.  
  13.  
  14.  
  15. [windows]
  16. fgLockText=1
  17. fgUseColor=1
  18. fgWinRect=211 87 781 389
  19. gRichDocRect=10 34 500 404
  20.  
  21. [fonts]
  22. gNameFontName=Times
  23. gNameFontSize=10
  24. gNameStyle=0
  25. gBaseFontName=Courier
  26. gBaseFontSize=10
  27. gBaseStyle=0
  28. gIndexFontName=Times
  29. gIndexFontSize=9
  30. gIndexStyle=0
  31. gSeqFontName=Courier
  32. gSeqFontSize=10
  33. gSeqStyle=2
  34. gTextFontName=Courier
  35. gTextFontSize=10
  36.  
  37. [seqprint]
  38. gNameLeft=0
  39. gNameRight=1
  40. gIndexLeft=1
  41. gIndexRight=1
  42. gIndexTop=1
  43. gColored=0
  44. gShowComplement=1
  45. gThreeLetAA=0
  46. gShowAA1=1
  47. gShowAA2=1
  48. gShowAA3=1
  49. gShowCompAA1=1
  50. gShowCompAA2=1
  51. gShowCompAA3=1
  52. gOnlyORF=0
  53. gBasesPerLine=60
  54.  
  55. [remap]
  56. gShowAllZymes=1
  57. gShowCutpoints=1
  58. gShowNoncutters=1
  59. gShowExcludedCutters=1
  60. gREMinCuts=1
  61. gREMaxCuts=999
  62.  
  63.  
  64.  
  65. [version=6]
  66. ; updates for release 0.4i, aug'95
  67.  
  68. [seqdoc]
  69. gWriteMasks=1
  70. gMinCommonPercent=70
  71. fgStartDoc=1
  72. fgViewMode=0
  73. fgSire=SPup
  74.  
  75.  
  76. [version=11]
  77. ; updates for release 0.5a, jan'96
  78.  
  79. [paths]
  80. ; can use UNIX standard path descriptions here. DCLAP converts to local OS
  81. ; e.g., /root/path/to/somewhere   -- full path from a root disk
  82. ; or,  relative/path/to/somewhere -- relative path from app folder
  83. ; okay to use local OS conventions, but avoid "/" in path if not UNIX
  84. temp=
  85. tables=tables
  86. apps=apps
  87. help=help
  88.  
  89. [data]
  90. codon=tables:codon.table
  91. renzyme=tables:renzyme.table
  92. color=tables:color.table
  93.  
  94. [menus]
  95. menubar=file,edit,seq,inet,childapp,window
  96. file=File,New/N,Open.../O,Close/W,-,Save/S,Save As...,-,Print,Help/H,Quit/Q
  97. edit=Edit,Undo/U,-,Cut/X,Copy/C,Paste/V,Clear,-,Select All/A
  98. seq=Sequence
  99. inet=Internet
  100. apps=ChildApp
  101. window=Windows
  102.  
  103. [apps]
  104. clustal=ClustalW Multiple align...
  105. cap=CAP Contig assembly...
  106. fastdnaml=FastDNAml...
  107. lsadt=DeSoete LSADTree...
  108. drawtree=Draw unrooted Tree...
  109. drawgram=Draw Cladogram...
  110. autoseq=AutoSeq base calling...
  111. dnaml
  112. ;dnaml=Phylip DNAML...
  113.  
  114. [autoseq]
  115. form=$apps:autoseq.html
  116.  
  117. [drawgram]
  118. form=$apps:drawgram.html
  119.  
  120. [drawtree]
  121. form=$apps:drawtree.html
  122.  
  123. [lsadt]
  124. form=$apps:lsadt.html
  125.  
  126. [clustal]
  127. form=$apps:clustalw.html
  128.  
  129. [cap]
  130. form=$apps:cap2.html
  131.  
  132. [fastdnaml]
  133. form=$apps:fastdnaml.html
  134.  
  135. [dnaml]
  136. form=$apps:dnaml.html
  137.  
  138.  
  139. [version=63]
  140. ; new for version 0.6c, june 1996
  141.  
  142. [apps]
  143. autoseq=AutoSeq base calling...
  144.  
  145. [autoseq]
  146. form=$apps:autoseq.html
  147.  
  148. [inet]
  149. bop_title=[BOP servers]
  150. gcg_map=GCG Map...
  151. gcg_blast=GCG Blast...
  152. gcg_pepstruc=GCG Peptide Struct...
  153. gcg_motifs=GCG Motifs...
  154. gcg_fasta=GCG FastA...
  155. gcg_prime=GCG Prime...
  156. gcg_mfold=GCG MFold...
  157. gcg_pileup=GCG Pileup...
  158.  
  159. [gcg_map]
  160. form=$apps:gcg_map.html
  161. [gcg_blast]
  162. form=$apps:gcg_blast.html
  163. [gcg_pepstruc]
  164. form=$apps:gcg_pepstruc.html
  165. [gcg_motifs]
  166. form=$apps:gcg_motifs.html
  167. [gcg_fasta]
  168. form=$apps:gcg_fasta.html
  169. [gcg_prime]
  170. form=$apps:gcg_prime.html
  171. [gcg_mfold]
  172. form=$apps:gcg_mfold.html
  173. [gcg_pileup]
  174. form=$apps:gcg_pileup.html
  175.  
  176.